4DTC

Crystal Structure of DPP-IV with Compound C5

Structural Biology Knowledgebase: 4DTC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.206

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DTC

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 169859.65

Macromolecule Entities
Molecule Chains Length Organism Details
Dipeptidyl peptidase 4 A, B 728 Homo sapiens EC#: 3.4.14.5 IUBMB
Fragment: extracellular domain (residues 39-766)
Gene Name(s): DPP4 Gene View ADCP2 CD26

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
D5C
Query on D5C

A, B N-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butyl]- 3'-(trifluoromethyl)biphenyl-4-carboxamide
C24 H20 F6 N2 O
UPWUIPKOGKXOGK-IBGZPJMESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.206
  • Space Group: P 32
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 80.47 α = 90.00
b = 80.47 β = 90.00
c = 290.90 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-21
  • Released Date: 2013-02-27
  • Deposition author(s): Xiong, B., Zhu, L.R., Chen, D.Q., Zhao, Y.L., Jiang, F., Shen, J.K.

Revision History

No revisions since initial release