4D9Y

The crystal structure of Chelerythrine bound to DNA d(CGTACG)

Structural Biology Knowledgebase: 4D9Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.314
  • R-Value Work: 0.220

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4D9Y

Classification: DNA

Total Structure Weight: 7625.38

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') A, B, C, D 6 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
CTI
Query on CTI

A 1,2-dimethoxy-12-methyl[1,3]benzodioxolo[5,6- c]phenanthridin-12-ium
chelerythrine (Synonym)
C21 H18 N O4
LLEJIEBFSOEYIV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.314
  • R-Value Work: 0.220
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 30.23 α = 90.00
b = 30.23 β = 90.00
c = 119.25 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2012-01-12
  • Released Date: 2013-01-23
  • Deposition author(s): Ferraroni, M., Bazzicalupi, C., Gratteri, P., Bilia, A.R.

Revision History

  • 2013-03-13
    Type: Refinement description | Details: --