Crystal structure of HIV-1 NEF Fyn-SH3 R96W variant
4D8D
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/protein Binding
    Structure Weight: 48534.47
    Molecule: Tyrosine-protein kinase Fyn
    Polymer: 1 Type: protein Length: 58
    Chains: A, C
    EC#: 2.7.10.2   
    Fragment: SRC-HOMOLOGY 3 DOMAIN (UNP Residues 84-141)
    Mutation: R96W
    Organism: Homo sapiens
    Gene Name: Gene View for FYN
    UniProtKB: Protein Feature View | Search PDB | P06241  
    Molecule: Protein Nef
    Polymer: 2 Type: protein Length: 151
    Chains: B, D
    Fragment: CONSERVED CORE DOMAIN (UNP Residues 58-204)
    Organism: Human immunodeficiency virus type 1 (BRU ISOLATE)
    Gene Name: nef
    UniProtKB: Protein Feature View | Search PDB | P03406  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Human immunodeficiency virus type 1   Taxonomy   Common Name: Hiv-1 Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3H0F    
    3H0H    
    3H0I    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GOL
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    GOL C3 H8 O3
    GLYCEROL
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Arold, S.T.,  Hoh, F.,  Dumas, C.

    Deposition:   2012-01-10
    Release:   2013-01-16
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.52
    R-Value: 0.213 (obs.)
    R-Free: 0.238
    Space Group: P 65 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 108.01 α = 90.00 
    b = 108.01 β = 90.00 
    c = 224.96 γ = 120.00