4D6P

RADA C-TERMINAL ATPASE DOMAIN FROM PYROCOCCUS FURIOSUS BOUND TO AMPPNP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 4D6P

Classification: HYDROLASE

Total Structure Weight: 52265.49

Macromolecule Entities
Molecule Chains Length Organism Details
DNA REPAIR AND RECOMBINATION PROTEIN RADA A, B 231 Pyrococcus furiosus Fragment: C-TERMINAL ATPASE DOMAIN, UNP RESIDUES 108-349
Mutation: R288N, ΔP289, ΔD290, ΔA291, ΔF292, ΔF293, ΔG294, ΔD295, ΔP296, ΔT297, ΔR298, ΔP299, ΔI300
Gene Name(s): radA PF1926
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, B PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.190
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 40.45 α = 90.00
b = 87.42 β = 91.46
c = 62.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-11-13
  • Released Date: 2015-01-14
  • Deposition author(s): Marsh, M.E., Ehebauer, M.T., Scott, D., Abell, C., Blundell, T.L., Hyvonen, M.
  • Previous versions: 4A74

Revision History

  • 2016-07-20
    Type: Database references
  • 2016-07-27
    Type: Database references