4CL3

1.70 A resolution structure of the malate dehydrogenase from Chloroflexus aurantiacus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.166

Literature

Macromolecules
Sequence Display for 4CL3

Classification: OXIDOREDUCTASE

Total Structure Weight: 67487.16

Macromolecule Entities
Molecule Chains Length Organism Details
MALATE DEHYDROGENASE A, D 309 Chloroflexus sp. y-400-fl EC#: 1.1.1.37 IUBMB
Gene Name(s): mdh Chy400_0980
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A, D CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A, D DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A, D ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.166
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 106.23 α = 90.00
b = 106.23 β = 90.00
c = 102.57 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-01-11
  • Released Date: 2014-02-05
  • Deposition author(s): Talon, R., Madern, D., Girard, E.
  • Previous versions: 4BGT

Revision History

  • Version 1_0: 2014-02-05

    Type: Initial release

  • Version 1_1: 2014-03-19

    Type: Database references