4CD4
The structure of GH26 beta-mannanase CjMan26C from Cellvibrio japonicus in complex with ManIFG
- PDB DOI: https://doi.org/10.2210/pdb4CD4/pdb
- Classification: HYDROLASE
- Organism(s): Cellvibrio japonicus Ueda107
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2013-10-30 Released: 2014-04-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.20 Å
- R-Value Free: 0.134
- R-Value Work: 0.111
- R-Value Observed: 0.112
This is version 1.3 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ENDO-1,4-BETA MANNANASE, PUTATIVE, MAN26C | 419 | Cellvibrio japonicus Ueda107 | Mutation(s): 0 EC: 3.2.1.78 |  | |
UniProt | |||||
Find proteins for B3PGI1 (Cellvibrio japonicus (strain Ueda107)) Explore B3PGI1 Go to UniProtKB: B3PGI1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B3PGI1 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BMA Query on BMA | D [auth A] | beta-D-mannopyranose C6 H12 O6 WQZGKKKJIJFFOK-RWOPYEJCSA-N |  | ||
| IFM Query on IFM | E [auth A] | 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE C6 H13 N O3 QPYJXFZUIJOGNX-HSUXUTPPSA-N |  | ||
| NA Query on NA | B [auth A], C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.20 Å
- R-Value Free: 0.134
- R-Value Work: 0.111
- R-Value Observed: 0.112
- Space Group: P 61 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 84.518 | α = 90 |
| b = 84.518 | β = 90 |
| c = 244.491 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| xia2 | data reduction |
| Aimless | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2014-04-02 Deposition Author(s): Williams, R.J., Iglesias-Fernandez, J., Stepper, J., Jackson, A., Thompson, A.J., Lowe, E.C., White, J.M., Gilbert, H.J., Rovira, C., Davies, G.J., Williams, S.J.
Revision History (Full details and data files)
- Version 1.0: 2014-04-02
Type: Initial release - Version 1.1: 2015-07-15
Changes: Non-polymer description - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Other, Structure summary - Version 1.3: 2023-12-20
Changes: Data collection, Database references, Refinement description, Structure summary
