4CAD

Mechanism of farnesylated CAAX protein processing by the integral membrane protease Rce1

Structural Biology Knowledgebase: 4CAD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 4CAD

Classification: PROTEIN BINDING

Total Structure Weight: 318565.56

Macromolecule Entities
Molecule Chains Length Organism Details
ANTIBODY FAB FRAGMENT LIGHT CHAIN A, D, G, J 214 Mus musculus
ANTIBODY FAB FRAGMENT HEAVY CHAIN B, E, H, K 227 Mus musculus
RAS AND A-FACTOR CONVERTING ENZYME 1, RCE1 C, F, I, L 271 Methanococcus maripaludis Gene Name(s): rce1 MMP0485
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Intramembrane Proteases

Protein Name: CAAX protease Rce1


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LMT
Query on LMT

I, L DODECYL-BETA-D-MALTOSIDE
C24 H46 O11
NLEBIOOXCVAHBD-QKMCSOCLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BOG
Query on BOG

C, F B-OCTYLGLUCOSIDE
C14 H28 O6
HEGSGKPQLMEBJL-RKQHYHRCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.226
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 113.06 α = 89.06
b = 90.09 β = 102.29
c = 99.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-10-08
  • Released Date: 2013-11-27
  • Deposition author(s): Kulkarni, K., Manolaridis, I., Dodd, R.B., Cronin, N., Ogasawara, S., Iwata, S., Barford, D.

Revision History

  • 2013-12-18
    Type: Citation | Details: JRNL
  • 2013-12-11
    Type: Citation | Details: JRNL