Cas6 (TTHA0078) product complex
DOI:10.2210/pdb4c8z/pdb   NDB ID: NA2769
4C8Z
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/rna
    Structure Weight: 62584.12
    Molecule: CAS6A
    Polymer: 1 Type: protein Length: 243
    Chains: A, B
    Organism: Thermus thermophilus HB8
    Gene Name: TTHA0078
    UniProtKB: Search PDB | Q5SM65   Protein Feature View
    Molecule: R1 REPEAT RNA CLEAVAGE PRODUCT
    Polymer: 2 Type: rna Length: 28
    Chains: C
    Fragment: REPEAT STEM-LOOP
    Details: R1 REPEAT RNA CLEAVAGE PRODUCT
    Organism: Thermus thermophilus HB8
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus hb8   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (Thermus thermophilus HB8)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4C8Y   CAS6 (TTHA0078) SUBSTRATE MIMIC COMPLEX 
    4C97   CAS6 (TTHA0078) H37A MUTANT 
    4C98   THERMUS THERMOPHILUS CAS6 (TTHB231) 
    4C9D   CAS6 (TTHB231) PRODUCT COMPLEX 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    K
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    K K
    POTASSIUM ION
    SO4
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    SO4 O4 S
    SULFATE ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    23G
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    23G C10 H13 N5 O10 P2 G rna3PrimeTerminus
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2769
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Jinek, M.,  Niewoehner, O.,  Doudna, J.A.

    Deposition:   2013-10-02
    Release:   2013-11-06
    Last Modified (REVDAT):   2014-02-12
     
  •   Revision History    Hide
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    2014-02-12
    Citation
    2013-11-20
    Atom nomenclature
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.50
    R-Value: 0.179 (obs.)
    R-Free: 0.217
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 43.72 α = 90.00 
    b = 83.08 β = 100.65 
    c = 72.38 γ = 90.00