4C7A

Crystal structure of the Smoothened CRD, selenomethionine-labeled

Structural Biology Knowledgebase: 4C7A SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.236

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4C7A

Classification: SIGNALING PROTEIN

Total Structure Weight: 44798.15

Macromolecule Entities
Molecule Chains Length Organism Details
SMOOTHENED A, B 193 Danio rerio Fragment: CYSTEINE-RICH DOMAIN (CRD), RESIDUES 28-210
Gene Name(s): smo smoh

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.236
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.13 α = 90.00
b = 68.13 β = 90.00
c = 92.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-09-20
  • Released Date: 2013-11-06
  • Deposition author(s): Nachtergaele, S., Whalen, D.M., Mydock, L.K., Zhao, Z., Malinauskas, T., Krishnan, K., Ingham, P.W., Covey, D.F., Rohatgi, R., Siebold, C.

Revision History

  • 2013-11-13
    Type: Citation | Details: JRNL