4C79

Crystal structure of the Smoothened CRD, native


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 4C79

Classification: SIGNALING PROTEIN

Total Structure Weight: 44399.74

Macromolecule Entities
Molecule Chains Length Organism Details
SMOOTHENED A, B 193 Danio rerio Fragment: CYSTEINE-RICH DOMAIN (CRD), RESIDUES 28-210
Gene Name(s): smo smoh
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.214
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 68.62 α = 90.00
b = 68.62 β = 90.00
c = 95.03 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-09-20
  • Released Date: 2013-11-06
  • Deposition author(s): Nachtergaele, S., Whalen, D.M., Mydock, L.K., Zhao, Z., Malinauskas, T., Krishnan, K., Ingham, P.W., Covey, D.F., Rohatgi, R., Siebold, C.

Revision History

  • Version 1_0: 2013-11-06

    Type: Initial release

  • Version 1_1: 2013-11-13

    Type: Database references