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Crystal structure of full length Deinococcus radiodurans UvrD in complex with DNA
DOI:10.2210/pdb4c2t/pdb   NDB ID: NA2725
4C2T
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 367251.13
    Molecule: DNA HELICASE II
    Polymer: 1 Type: protein Length: 745
    Chains: A, B, C, D
    EC#: 3.6.4.12   
    Organism: Deinococcus radiodurans
    Gene Name: DR_1775
    UniProtKB: Protein Feature View | Search PDB | Q9RTI9  
    Molecule: DNA STRAND FOR28
    Polymer: 2 Type: dna Length: 28
    Chains: M, P
    Organism: synthetic construct
    Molecule: DNA STRAND REV28
    Polymer: 3 Type: dna Length: 28
    Chains: N, O
    Organism: synthetic construct
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Deinococcus radiodurans   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4C2U  CRYSTAL STRUCTURE OF DEINOCOCCUS RADIODURANS UVRD IN COMPLEX WITH DNA, FORM 1 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ANP
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    ANP C10 H17 N6 O12 P3
    PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2725
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Stelter, M.,  Acajjaoui, S.,  McSweeney, S.,  Timmins, J.

    Deposition:   2013-08-20
    Release:   2013-10-30
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   4.00
    R-Value: 0.248 (obs.)
    R-Free: 0.271
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 71.46 α = 90.00 
    b = 390.04 β = 106.13 
    c = 71.56 γ = 90.00