4BZI

The structure of the COPII coat assembled on membranes


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 23.0 Å
  • Aggregation State: Helical Array
  • Reconstruction Method: Tomography

Literature

Macromolecules
Sequence Display for 4BZI

Classification: TRANSPORT PROTEIN

Total Structure Weight: 945064.63

Macromolecule Entities
Molecule Chains Length Organism Details
SEC23P A, D, G 768 Saccharomyces cerevisiae Gene Name(s): SEC23 YPR181C P9705.14
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
SAR1P B, J, K 190 Saccharomyces cerevisiae EC#: 3.6.5 IUBMB
Mutation: G139A
Gene Name(s): SAR1 YPL218W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
SEC24P E, L, M 926 Saccharomyces cerevisiae Mutation: A408T, A865V
Gene Name(s): SEC24 ANU1 YIL109C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
SEC24P F, N, O 926 Saccharomyces cerevisiae Gene Name(s): SEC24 ANU1 YIL109C

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GNP
Query on GNP

B, J, K PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
C10 H17 N6 O13 P3
UQABYHGXWYXDTK-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, D, E, G, L, M ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B, J, K MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 23.0 Å
  • Reconstruction Method: Tomography

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-26
  • Released Date: 2013-09-18
  • Deposition author(s): Zanetti, G., Prinz, S., Daum, S., Meister, A., Schekman, R., Bacia, K., Briggs, J.A.G.

Revision History

  • 2013-10-23
    Type: Database references
  • 2017-08-30
    Type: Data collection, Derived calculations, Refinement description