4BZF

Crystal structure of galactose mutarotase GalM from Bacillus subtilis with trehalose

• PDB DOI: https://doi.org/10.2210/pdb4BZF/pdb

• Classification: ISOMERASE
• Organism(s): Bacillus subtilis subsp. subtilis str. 168
• Expression System: Escherichia coli K-12
• Mutation(s): No 


• Deposited: 2013-07-25 Released: 2014-08-13 
• Deposition Author(s): Vanden Broeck, A., Sauvage, E., Herman, R., Kerff, F., Duez, C., Charlier, P.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 0.238 
• R-Value Work: 0.194 
• R-Value Observed: 0.197 

Literature

Crystal Structure of Galactose Mutarotase Galm from Bacillus Subtilis with Trehalose

Vanden Broeck, A., Sauvage, E., Herman, R., Kerff, F., Duez, C., Charlier, P.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 75.57 kDa 
• Atom Count: 5,959 
• Modelled Residue Count: 645 
• Deposited Residue Count: 648 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ALDOSE 1-EPIMERASE	A, B	324	Bacillus subtilis subsp. subtilis str. 168	Mutation(s): 0  Gene Names: GALM EC: 5.1.3.3
UniProt
Find proteins for P39840 (Bacillus subtilis (strain 168)) Explore P39840  Go to UniProtKB:  P39840

Oligosaccharides

Help

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose	C, D	2		N/A
Glycosylation Resources
GlyTouCan:  G92130SN GlyCosmos:  G92130SN

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CIT	F [auth A], G [auth B]	CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N
PGE	E [auth A]	TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N
ACT	H [auth B]	ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M

Biologically Interesting Molecules (External Reference) 1 Unique

Entity ID: 2
ID	Chains	Name	Type/Class	2D Diagram	3D Interactions
PRD_900006	C, D	trehalose	Oligosaccharide / Nutrient

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 0.238 
• R-Value Work: 0.194 
• R-Value Observed: 0.197 
• Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.19	α = 90
b = 83.322	β = 90
c = 124.446	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-08-13 
Deposition Author(s): Vanden Broeck, A., Sauvage, E., Herman, R., Kerff, F., Duez, C., Charlier, P.

Revision History  

• Version 1.0: 2014-08-13
  Type: Initial release
  
• Version 2.0: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Other, Structure summary
• Version 2.1: 2023-12-20
  Changes: Data collection, Database references, Refinement description, Structure summary