4BWF

Pex4p-Pex22p disulphide bond mutant

Structural Biology Knowledgebase: 4BWF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.23 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.203

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BWF

Classification: LIGASE / SIGNALING PROTEIN

Total Structure Weight: 34353.55

Macromolecule Entities
Molecule Chains Length Organism Details
UBIQUITIN-CONJUGATING ENZYME E2-21 KDA A 172 Saccharomyces cerevisiae EC#: 2.3.2.23 IUBMB
Fragment: UBC DOMAIN, RESIDUES 15-183
Mutation: S15A, C105S, C146S
Gene Name(s): PEX4 PAS2 UBC10 YGR133W
PEROXISOME ASSEMBLY PROTEIN 22 B 130 Saccharomyces cerevisiae Fragment: SOLUBLE DOMAIN, RESIDUES 54-180
Gene Name(s): PEX22 YAL055W

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.23 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.203
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 138.86 α = 90.00
b = 42.80 β = 100.14
c = 60.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-01
  • Released Date: 2013-07-17
  • Deposition author(s): Williams, C., van den Berg, M., Stanley, W.A., Wilmanns, M., Distel, B.
  • Previous versions: 2Y9O

Revision History

  • 2013-08-07
    Type: Citation | Details: JRNL