4BWC

X-ray structure of a phospholiapse B like protein 1 from bovine kidneys

Structural Biology Knowledgebase: 4BWC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.188

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BWC

Classification: HYDROLASE

Total Structure Weight: 58878.54

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHOLIPASE B-LIKE 1 A 170 Bos taurus EC#: 3.1.1 IUBMB
Fragment: N-TERMINAL SEGMENT, RESIDUES 36-205
Gene Name(s): PLBD1 Gene View
PHOSPHOLIPASE B-LIKE 1 B 321 Bos taurus EC#: 3.1.1 IUBMB
Fragment: C-TERMINAL SEGMENT, RESIDUES 225-545
Gene Name(s): PLBD1 Gene View

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P6G
Query on P6G

B HEXAETHYLENE GLYCOL
POLYETHYLENE GLYCOL PEG400 (Synonym)
C12 H26 O7
IIRDTKBZINWQAW-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
P4G
Query on P4G

A 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE
C8 H18 O3
RRQYJINTUHWNHW-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
OCS
Query on OCS
B L-PEPTIDE LINKING C3 H7 N O5 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.188
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 97.37 α = 90.00
b = 97.37 β = 90.00
c = 140.95 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-01
  • Released Date: 2013-09-18
  • Deposition author(s): Repo, H., Kuokkanen, E., Oksanen, E., Goldman, A., Heikinheimo, P.

Revision History

  • 2014-02-05
    Type: Citation | Details: JRNL