CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THIOALKYLIMIDATE FORMED FROM THIO-ACETYL-LYSINE ACS2-PEPTIDE CRYSTALLIZED IN PRESENCE OF THE INHIBITOR EX-527
4BVF
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/ligase
    Structure Weight: 33417.74
    Molecule: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL
    Polymer: 1 Type: protein Length: 284
    Chains: A
    EC#: 3.5.1   
    Fragment: RESIDUES 116-399'
    Organism: Homo sapiens
    Gene Names: Gene View for SIRT3 SIR2L3
    UniProtKB: Protein Feature View | Search PDB | Q9NTG7  
    Molecule: ACETYL-COENZYME A SYNTHETASE 2-LIKE, MITOCHONDRIAL
    Polymer: 2 Type: protein Length: 10
    Chains: B
    EC#: 6.2.1.1   
    Fragment: RESIDUES 638-647
    Organism: Homo sapiens
    Gene Names: Gene View for ACSS1 ACAS2L KIAA1846
    UniProtKB: Protein Feature View | Search PDB | Q9NUB1  
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (Homo sapiens)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3GLT   CRYSTAL STRUCTURE OF HUMAN SIRT3 WITH ADPR BOUND TO THE ACECS2 PEPTIDE CONTAINING A THIOACETYL LYSINE 
    4BUZ   SIR2 COMPLEX STRUCTURE MIXTURE OF EX-527 INHIBITOR AND REACTION PRODUCTS OR OF REACTION SUBSTRATES P53 PEPTIDE AND NAD 
    4BV2   CRYSTAL STRUCTURE OF SIR2 IN COMPLEX WITH EX-527 AND 2'-O-ACETYL-ADP-RIBOSE 
    4BV3   CRYSTAL STRUCTURE OF SIRT3 IN COMPLEX WITH EX-527 AND NAD 
    4BVB   CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH EX- 527 AND ADP-RIBOSE 
    4BVE   CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THIOALKYLIMIDATE FORMED FROM THIO-ACETYL-LYSINE ACS2- PEPTIDE 
    4BVG   CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH NATIVE ALKYLIMIDATE FORMED FROM ACETYL-LYSINE ACS2- PEPTIDE CRYSTALLIZED IN PRESENCE OF THE INHIBITOR EX- 527 
    4BVH   CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THE INHIBITOR EX-527 AND 2'-O-ACETYL-ADP-RIBOSE 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    EDO
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    EDO C2 H6 O2
    1,2-ETHANEDIOL
    ZN
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    ZN Zn
    ZINC ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    FZN
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    FZN C23 H37 N7 O15 P2 S LYS lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Gertz, M.,  Weyand, M.,  Steegborn, C.

    Deposition:   2013-06-25
    Release:   2013-07-17
    Last Modified (REVDAT):   2013-08-07
     
  •   Revision History    Hide
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    2013-08-07
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.70
    R-Value: 0.171 (obs.)
    R-Free: 0.230
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 80.50 α = 90.00 
    b = 127.55 β = 90.00 
    c = 76.34 γ = 90.00