4BOZ

Structure of OTUD2 OTU domain in complex with K11-linked di ubiquitin

Structural Biology Knowledgebase: 4BOZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.03 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.193

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BOZ

Classification: HYDROLASE

Total Structure Weight: 67315.72

Macromolecule Entities
Molecule Chains Length Organism Details
UBIQUITIN THIOESTERASE OTU1 A, D 183 Homo sapiens EC#: 3.4.19.12 IUBMB
Fragment: RESIDUES 132-314
Mutation: C160A
Gene Name(s): YOD1 Gene View DUBA8 HIN7 OTUD2 PRO0907
UBIQUITIN-C B, C, E 76 Homo sapiens Gene Name(s): UBC Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, D GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.03 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.193
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 174.79 α = 90.00
b = 44.22 β = 91.41
c = 84.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-22
  • Released Date: 2013-07-17
  • Deposition author(s): Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

Revision History

No revisions since initial release