4BOQ

Structure of OTUD2 OTU domain

Structural Biology Knowledgebase: 4BOQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.171

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BOQ

Classification: HYDROLASE

Total Structure Weight: 21100.88

Macromolecule Entities
Molecule Chains Length Organism Details
UBIQUITIN THIOESTERASE OTU1 A 183 Homo sapiens EC#: 3.4.19.12 IUBMB
Fragment: RESIDUES 132-314
Gene Name(s): YOD1 Gene View DUBA8 HIN7 OTUD2 PRO0907

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.171
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.67 α = 90.00
b = 60.67 β = 90.00
c = 86.18 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-22
  • Released Date: 2013-07-17
  • Deposition author(s): Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

Revision History

No revisions since initial release