4BOL

Crystal structure of AmpDh2 from Pseudomonas aeruginosa in complex with pentapeptide

Structural Biology Knowledgebase: 4BOL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.147

Literature

Macromolecules
Sequence Display for 4BOL

Classification: HYDROLASE

Total Structure Weight: 58941.84

Macromolecule Entities
Molecule Chains Length Organism Details
AMPDH2 A, B 259 Pseudomonas aeruginosa Mutation: C17M
Gene Name(s): ampDh2 PA5485
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
J0J
Query on J0J

A, B D-alanyl-N-[(2S,6R)-6-amino-6-carboxy-1-{[(1R)- 1-carboxyethyl]amino}-1-oxohexan-2-yl]-D- glutamine
C18 H31 N5 O9
VFGFFQOPKZHQLZ-PZWNZHSQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.147
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 47.63 α = 90.00
b = 97.23 β = 90.00
c = 104.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-21
  • Released Date: 2013-07-17
  • Deposition author(s): Artola-Recolons, C., Martinez-Caballero, S., Lee, M., Carrasco-Lopez, C., Hesek, D., Spink, E.E., Lastochkin, E., Zhang, W., Hellman, L.M., Boggess, B., Mobashery, S., Hermoso, J.A.

Revision History

  • 2013-07-31
    Type: Citation | Details: JRNL
  • 2013-07-24
    Type: Atom nomenclature | Details: ATOM
  • 2013-07-24
    Type: Other | Details: ANISOU