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Talon, R., Girard, E., Franzetti, B., Madern, D.To be published.
4BGV
1.8 A resolution structure of the malate dehydrogenase from Picrophilus torridus in its apo form
- PDB DOI: https://doi.org/10.2210/pdb4BGV/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Picrophilus oshimae
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2013-03-28 Released: 2014-04-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.81 Å
- R-Value Free: 0.185
- R-Value Work: 0.146
- R-Value Observed: 0.148
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| MALATE DEHYDROGENASE | 323 | Picrophilus oshimae | Mutation(s): 0 EC: 1.1.1.37 |  | |
UniProt | |||||
Find proteins for Q6L0C3 (Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828 / KAW 2/3)) Explore Q6L0C3 Go to UniProtKB: Q6L0C3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6L0C3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PG6 Query on PG6 | L [auth C] | 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE C12 H26 O6 DMDPGPKXQDIQQG-UHFFFAOYSA-N |  | ||
| CIT Query on CIT | G [auth B] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | ||
| PEG Query on PEG | E [auth A] F [auth A] H [auth B] I [auth B] J [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.81 Å
- R-Value Free: 0.185
- R-Value Work: 0.146
- R-Value Observed: 0.148
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 81.167 | α = 90 |
| b = 81.167 | β = 90 |
| c = 395.99 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
Entry History
Deposition Data
- Released Date: 2014-04-16 Deposition Author(s): Talon, R., Madern, D., Girard, E.
Revision History (Full details and data files)
- Version 1.0: 2014-04-16
Type: Initial release - Version 1.1: 2015-03-04
Changes: Database references - Version 1.2: 2015-04-01
Changes: Data collection - Version 1.3: 2019-03-06
Changes: Data collection, Experimental preparation, Other
