4BFA

Crystal structure of E. coli dihydrouridine synthase C (DusC)

Structural Biology Knowledgebase: 4BFA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.177
  • R-Value Work: 0.134

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BFA

Classification: OXIDOREDUCTASE

Total Structure Weight: 76687.92

Macromolecule Entities
Molecule Chains Length Organism Details
TRNA-DIHYDROURIDINE SYNTHASE C A, B 338 Escherichia coli EC#: 1.3.1 IUBMB
Gene Name(s): dusC yohI b2140 JW2128
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A, B FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NO3
Query on NO3

A, B NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.177
  • R-Value Work: 0.134
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 68.54 α = 90.00
b = 99.95 β = 90.00
c = 119.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-16
  • Released Date: 2013-11-06
  • Deposition author(s): Byrne, R.T., Whelan, F., Konevega, A., Aziz, N., Rodnina, M., Antson, A.A.

Revision History

  • 2015-05-27
    Type: Citation | Details: JRNL
  • 2015-05-13
    Type: Citation | Details: JRNL
  • 2015-04-22
    Type: Citation | Details: JRNL