4BBZ

Structure of human butyrylcholinesterase inhibited by CBDP (2-min soak): Cresyl-phosphoserine adduct

Structural Biology Knowledgebase: 4BBZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.166

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BBZ

Classification: HYDROLASE

Total Structure Weight: 62576.14

Macromolecule Entities
Molecule Chains Length Organism Details
CHOLINESTERASE A 529 Homo sapiens EC#: 3.1.1.8 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 29-557
Mutation: N17Q, N455Q, N481Q
Details: CRESYL-PHOSPHATE ADDUCT ON S198
Gene Name(s): BCHE Gene View CHE1

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
4OJ
Query on 4OJ

A (2-methylphenyl) dihydrogen phosphate
o-cresyl-phosphate (Synonym)
C7 H9 O4 P
HUJOGFUFUMBXPL-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUL
Query on FUL

A BETA-L-FUCOSE
6-DEOXY-BETA-L-GALACTOSE (Synonym)
C6 H12 O5
SHZGCJCMOBCMKK-KGJVWPDLSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UNX
Query on UNX

A UNKNOWN ATOM OR ION
X
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.166
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 154.68 α = 90.00
b = 154.68 β = 90.00
c = 126.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-30
  • Released Date: 2013-02-06
  • Deposition author(s): Carletti, E., Colletier, J.-P., Schopfer, L.M., Santoni, G., Masson, P., Lockridge, O., Nachon, F., Weik, M.

Revision History

  • 2013-03-06
    Type: Citation | Details: JRNL