4B9H

Cladosporium fulvum LysM effector Ecp6 in complex with a beta-1,4- linked N-acetyl-D-glucosamine tetramer: I3C heavy atom derivative

Structural Biology Knowledgebase: 4B9H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4B9H

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 25927.54

Macromolecule Entities
Molecule Chains Length Organism Details
EXTRACELLULAR PROTEIN 6 A 228 Passalora fulva Details: CLADOSPORIUM FULVUM LYSM EFFECTOR ECP6 IN COMPLEX WITH A BETA-1,4-LINKED N-ACETYL-D-GLUCOSAMINE TETRAMER (CHITIN)
Gene Name(s):

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
I3C
Query on I3C

A 5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid
4, (Synonym)
C8 H4 I3 N O4
JEZJSNULLBSYHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NDG
Query on NDG

A 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.210
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.89 α = 90.00
b = 57.89 β = 90.00
c = 119.68 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-04
  • Released Date: 2013-07-17
  • Deposition author(s): Saleem-Batcha, R., Sanchez-Vallet, A., Hansen, G., Thomma, B.P.H.J., Mesters, J.R.

Revision History

  • 2013-09-25
    Type: Citation | Details: REMARK 1, JRNL