4ATT

FimH lectin domain co-crystal with a alpha-D-mannoside O-linked to a propynyl para methoxy phenyl

Structural Biology Knowledgebase: 4ATT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.177
  • R-Value Work: 0.150

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4ATT

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 17241.31

Macromolecule Entities
Molecule Chains Length Organism Details
FIMH A 158 Escherichia coli Fragment: LECTIN DOMAIN, RESIDUES 10-167
Details: RESIDUES 1-158 OF THE MATURE FIMH SEQUENCE
Gene Name(s): fimH b4320 JW4283

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HNV
Query on HNV

A 3-(4-methoxyphenyl)prop-2-yn-1-yl alpha-D- mannopyranoside
C16 H20 O7
UYJNIDIDTZJFNU-OWYFMNJBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
HNV N/A in BindingDB
Kd: 104.6 nM  BindingMOAD
Kd: 53 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.177
  • R-Value Work: 0.150
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 31.01 α = 90.00
b = 42.30 β = 90.00
c = 96.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-09
  • Released Date: 2013-05-22
  • Deposition author(s): Bouckaert, J., Touaibia, M., Roos, G., Shiao, T.C., Wang, Q., Papadopoulos, A., Roy, R.

Revision History

  • 2014-06-18
    Type: Citation | Details: JRNL
  • 2013-12-25
    Type: Citation | Details: JRNL