4ARJ

Crystal structure of a pesticin (translocation and receptor binding domain) from Y. pestis and T4-lysozyme chimera


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 4ARJ

Classification: HYDROLASE

Total Structure Weight: 77615.72

Macromolecule Entities
Molecule Chains Length Organism Details
PESTICIN, LYSOZYME A, B 339 Yersinia pestis Escherichia virus t4 EC#: 3.2.1.17 IUBMB
Fragment: N-TERMINAL DOMAIN OF PESTICIN, RESIDUES 1-167
Mutation: C221T, C264A
Details: CHIMERA OF THE N-TERMINAL DOMAIN OF PESTICIN FROM Y. PESTIS AND T4 LYSOZYME
Gene Name(s): E pst YP_pPCP06 YPPCP1.05c
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.192
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 194.87 α = 90.00
b = 51.51 β = 91.01
c = 107.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-04-24
  • Released Date: 2012-05-09
  • Deposition author(s): Zeth, K., Patzer, S.I., Albrecht, R., Braun, V.

Revision History

  • Version 1_0: 2012-05-09

    Type: Initial release

  • Version 1_1: 2012-05-30

    Type: Other

  • Version 1_2: 2012-07-18

    Type: Other

  • Version 1_3: 2012-10-31

    Type: Structure summary

  • Version 1_4: 2013-09-25

    Type: Derived calculations

  • Version 1_5: 2017-03-15

    Type: Source and taxonomy