4A6X

RadA C-terminal ATPase domain from Pyrococcus furiosus bound to ATP

Structural Biology Knowledgebase: 4A6X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4A6X

Classification: HYDROLASE

Total Structure Weight: 52083.69

Macromolecule Entities
Molecule Chains Length Organism Details
DNA REPAIR AND RECOMBINATION PROTEIN RADA A, B 231 Pyrococcus furiosus Fragment: RADA C-TERMINAL ATPASE DOMAIN, RESIDUES 108-349
Mutation: R288N, ΔP289, ΔD290, ΔA291, ΔF292, ΔF293, ΔG294, ΔD295, ΔP296, ΔT297, ΔR298, ΔP299, ΔI300
Gene Name(s): radA PF1926

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A, B ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.196
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.32 α = 90.00
b = 87.35 β = 91.23
c = 61.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-10
  • Released Date: 2012-11-21
  • Deposition author(s): Marsh, M.E., Ehebauer, M.T., Scott, D., Abell, C., Blundell, T.L., Hyvonen, M.

Revision History

  • 2016-07-27
    Type: Citation | Details: JRNL
  • 2016-07-20
    Type: Citation | Details: JRNL