CATALYTIC RNA ENZYME-PRODUCT COMPLEX
DOI:10.2210/pdb488d/pdb   NDB ID: UR0010
488D
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA
    Structure Weight: 22126.29
    Molecule: RNA RIBOZYME STRAND
    Polymer: 1 Type: rna Length: 16
    Chains: A
    Details: 16-MER
    Molecule: FIRST RNA FRAGMENT OF CLEAVED SUBSTRATE
    Polymer: 2 Type: rna Length: 20
    Chains: B
    Details: 20-MER, 3'-END CYCLIC PHOSPHATE
    Molecule: SECOND RNA FRAGMENT OF CLEAVED SUBSTRATE
    Polymer: 3 Type: rna Length: 5
    Chains: C
    Details: 5-MER
    Molecule: UNCLEAVED RNA SUBSTRATE
    Polymer: 4 Type: rna Length: 25
    Chains: D
    Details: 25-MER
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 4
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CD
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    CD Cd
    CADMIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    CCC
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    CCC C9 H13 N3 O10 P2 C rnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:UR0010
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Murray, J.B.,  Szoke, H.,  Szoke, A.,  Scott, W.G.

    Deposition:   2000-02-25
    Release:   2000-03-06
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   3.10
    R-Value: 0.258 (obs.)
    R-Free: 0.301
    Space Group: P 31 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 65.50 α = 90.00 
    b = 65.50 β = 90.00 
    c = 136.48 γ = 120.00