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DNA MINOR-GROOVE RECOGNITION OF A TRIS-BENZIMIDAZOLE DRUG
DOI:10.2210/pdb459d/pdb   NDB ID: DD0014
459D
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 7945.40
    Molecule: DNA (5'-D(*CP*GP*(CBR)P*AP*TP*AP*TP*TP*TP*GP*CP*G)-3')
    Polymer: 1 Type: dna Length: 12
    Chains: A
    Details: COMPLEXED WITH 2''-(4-METHOXYPHENYL)-5-(3-AMINO-1-PYRROLIDINYL)-2,5',2', 5''- TRI-BENZIMIDAZOLE
    Molecule: DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*AP*TP*GP*CP*G)-3')
    Polymer: 2 Type: dna Length: 12
    Chains: B
    Details: COMPLEXED WITH 2''-(4-METHOXYPHENYL)-5-(3-AMINO-1-PYRROLIDINYL)-2,5',2', 5''- TRI-BENZIMIDAZOLE
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    TBZ
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    TBZ C32 H29 N8 O
    2''-(4-METHOXYPHENYL)-5-(3-AMINO-1-PYRROLIDINYL)- 2,5',2',5''-TRI-BENZIMIDAZOLE
    TBZ:459D
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    CBR
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    CBR C9 H13 Br N3 O7 P DC dnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: DD0014
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Aymami, J.,  Nunn, C.M.,  Neidle, S.

    Deposition:   1999-03-10
    Release:   1999-06-28
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.30
    R-Value: 0.209 (obs.)
    R-Free: 0.283
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 25.50 α = 90.00 
    b = 40.42 β = 90.00 
    c = 65.55 γ = 90.00