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DNA MINOR-GROOVE RECOGNITION OF A TRIS-BENZIMIDAZOLE DRUG
 
 
DOI:10.2210/pdb459d/pdb   NDB ID: DD0014
459D
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: DNA
    Structure Weight: 7945.40
     
    Molecule:DNA (5'-D(*CP*GP*(CBR)P*AP*TP*AP*TP*TP*TP*GP*CP*G)-3')
    Polymer:1Type:polydeoxyribonucleotideLength:12
    Chains:A
    Other Details:COMPLEXED WITH 2''-(4-METHOXYPHENYL)-5-(3-AMINO-1-PYRROLIDINYL)-2,5',2', 5''- TRI-BENZIMIDAZOLE
    Molecule:DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*AP*TP*GP*CP*G)-3')
    Polymer:2Type:polydeoxyribonucleotideLength:12
    Chains:B
    Other Details:COMPLEXED WITH 2''-(4-METHOXYPHENYL)-5-(3-AMINO-1-PYRROLIDINYL)-2,5',2', 5''- TRI-BENZIMIDAZOLE
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 2
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    TBZ     2''-(4-METHOXYPHENYL)-5-(3-AMINO-1-PYRROLIDINYL)- 2,5',2',5''-TRI-BENZIMIDAZOLE C32 H29 N8 O 3DLigand Explorer Link out to Ligand Expos:TBZ Link out to SuperLigands:TBZ Link out to SuperHapten:TBZ
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    CBR 5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE (parent: DC)(type: dnaLinking) C9 H13 Br N3 O7 P Link out to Ligand Expos:CBR Link out to SuperLigands:CBR Link out to SuperHapten:CBR 2D
     
     
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  •  
    Move Section Deposition Summary Hide
    Authors:   Aymami, J.,   Nunn, C.M.,   Neidle, S.

    Deposition:   1999-03-10
    Release:   1999-06-28
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors
    View a histogram of Resolution Resolution[Å]: 2.30
    R-Value: 0.209 (obs.)
    R-Free: 0.283
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 25.50 α = 90.00 
    b = 40.42 β = 90.00 
    c = 65.55 γ = 90.00