445D

5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', Benzimidazole derivative complex

Structural Biology Knowledgebase: 445D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.227

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 445D

Classification: DNA

Total Structure Weight: 7862.25

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') A, B 12 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IA
Query on IA

A 2'-(3-IODOPHENYL)-5-(4-METHYL-1-PIPERAZINYL)- 2,5'-BI-BENZIMIDAZOLE
C25 H24 I N6
ZEXOKHKEQNNOBG-UHFFFAOYSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.227
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 25.38 α = 90.00
b = 40.71 β = 90.00
c = 66.24 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1999-01-14
  • Released Date: 2000-02-02
  • Deposition author(s): Squire, C.J., Baker, L.J., Clark, G.R., Martin, R.F., White, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4