427D

5'-D(*CP*GP*CP*(CH2-DM1)GP*CP*G)-3'

Structural Biology Knowledgebase: 427D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Observed: 0.101

Literature

Macromolecules
Sequence Display for 427D

Classification: DNA

Total Structure Weight: 2351.77

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*CP*(G49)P*CP*G)-3') A 6 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DM1
Query on DM1

A DAUNOMYCIN
DAUNORUBICIN (Synonym)
C27 H29 N O10
STQGQHZAVUOBTE-VGBVRHCVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
G49
Query on G49
A DNA LINKING C11 H16 N5 O7 P DG

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Observed: 0.101
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 27.82 α = 90.00
b = 27.82 β = 90.00
c = 51.86 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1998-09-21
  • Released Date: 2000-01-24
  • Deposition author(s): Schuerman, G., Van Meervelt, L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4