426D

THE STRUCTURE OF MOST STUDIED DNA FRAGMENT CHANGES UNDER THE INFLUENCE OF IONS: A NEW PACKING OF D(CGCGAATTCGCG)

Structural Biology Knowledgebase: 426D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.193

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 426D

Classification: DNA

Total Structure Weight: 7366.92

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' A, B 12 synthetic FIRST CYTOSINE OF EACH CHAIN IS NOT VISIBLE IN THE ELECTRON DENSITY

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.193
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 41.96 α = 90.00
b = 41.96 β = 90.00
c = 101.40 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1998-09-17
  • Released Date: 1998-11-30
  • Deposition author(s): Liu, J., Malinina, L., Subirana, J.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4