423D

5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3'

Structural Biology Knowledgebase: 423D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.173

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 423D

Classification: DNA

Total Structure Weight: 7448.36

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3') A, B 12 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.173
  • Space Group: H 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 64.07 α = 90.00
b = 64.07 β = 90.00
c = 44.68 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1998-09-14
  • Released Date: 1999-10-14
  • Deposition author(s): Rozenberg, H., Rabinovich, D., Frolow, F., Hegde, R.S., Shakked, Z.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4