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5'-D(*CP*GP*CP*(HYD)AP*AP*AP*TP*TP*TP*GP*CP*G)-3', 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE
 
 
DOI:10.2210/pdb403d/pdb   NDB ID: BDD001
403D
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: DNA
    Structure Weight: 7833.72
     
    Molecule:DNA (5'-D(*CP*GP*CP*(IGU)P*AP*AP*TP*TP*TP*GP*CP*G)-3')
    Polymer:1Type:polydeoxyribonucleotideLength:12
    Chains:A, B
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    HT1     2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)- 2,5'-BI-BENZIMIDAZOLE C27 H28 N6 O 3DLigand Explorer Link out to Ligand Expos:HT1 Link out to SuperLigands:HT1 Link out to SuperHapten:HT1
    MG     MAGNESIUM ION Mg 3DLigand Explorer Link out to Ligand Expos:MG Link out to SuperLigands:MG Link out to SuperHapten:MG
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    IGU 2'-DEOXYISOGUANINE-5'-MONOPHOSPHATE (parent: DG)(type: dnaLinking) C10 H14 N5 O7 P Link out to Ligand Expos:IGU Link out to SuperLigands:IGU Link out to SuperHapten:IGU 2D
     
     
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  •  
    Move Section Deposition Summary Hide
    Authors:   Robinson, H.,   Gao, Y.-G.,   Bauer, C.,   Roberts, C.,   Switzer, C.,   Wang, A.H.-J.

    Deposition:   1998-06-10
    Release:   1998-07-06
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors
    View a histogram of Resolution Resolution[Å]: 1.40
    R-Value: 0.242 (obs.)
    R-Free: 0.316
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 25.76 α = 90.00 
    b = 41.08 β = 90.00 
    c = 64.31 γ = 90.00