3ZMS

LSD1-CoREST in complex with INSM1 peptide

Structural Biology Knowledgebase: 3ZMS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.215

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZMS

Classification: OXIDOREDUCTASE / PEPTIDE

Total Structure Weight: 201609.72

Macromolecule Entities
Molecule Chains Length Organism Details
LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A A 872 Homo sapiens EC#: 1 IUBMB
Mutation: A171P, ΔD390, ΔT391, ΔV392, ΔK393
Gene Name(s): KDM1A Gene View AOF2 KDM1 KIAA0601 LSD1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
REST COREPRESSOR 1 B 482 Homo sapiens Gene Name(s): RCOR1 Gene View KIAA0071 RCOR
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
INSULINOMA-ASSOCIATED PROTEIN 1 C 509 Homo sapiens Gene Name(s): INSM1 Gene View IA1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.215
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 119.13 α = 90.00
b = 181.82 β = 90.00
c = 233.45 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-12
  • Released Date: 2013-06-12
  • Deposition author(s): Tortorici, M., Borrello, M.T., Tardugno, M., Chiarelli, L.R., Pilotto, S., Ciossani, G., Vellore, N.A., Cowan, J., O'Connell, M., Mai, A., Baron, R., Ganesan, A., Mattevi, A.

Revision History

  • 2013-08-28
    Type: Citation | Details: JRNL