3ZLR

Crystal structure of Bcl-xL in complex with inhibitor (WEHI-539).

Structural Biology Knowledgebase: 3ZLR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.158

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZLR

Classification: APOPTOSIS

Total Structure Weight: 37415.98

Macromolecule Entities
Molecule Chains Length Organism Details
BCL-2-LIKE PROTEIN 1 A, B 158 Homo sapiens Fragment: RESIDUES 1-26,83-209
Gene Name(s): BCL2L1 Gene View BCL2L BCLX

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
X0B
Query on X0B

A, B 5-[3-[4-(aminomethyl)phenoxy]propyl]-2-[(8E)- 8-(1,3-benzothiazol-2-ylhydrazinylidene)- 6,7-dihydro-5H-naphthalen-2-yl]-1,3-thiazole- 4-carboxylic acid
C31 H29 N5 O3 S2
JKMWZKPAXZBYEH-JWHWKPFMSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
X0B EC50: 48 nM (100) BindingDB
IC50: 1.1 - 7.1 nM (100) BindingDB
Kd: 1.4 nM (100) BindingDB

Kd: 0.6 nM  BindingMOAD
Kd: 0.55 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.158
  • Space Group: P 43 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.24 α = 90.00
b = 56.24 β = 90.00
c = 211.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-04
  • Released Date: 2013-04-24
  • Deposition author(s): Czabotar, P.E., Lessene, G.L., Smith, B.J., Colman, P.M.

Revision History

  • 2013-06-05
    Type: Citation | Details: JRNL
  • 2013-05-08
    Type: Citation | Details: JRNL