3WXT

Crystal structure of hen egg-white lysozyme


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.199 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Grease matrix as a versatile carrier of proteins for serial crystallography

Sugahara, M.Mizohata, E.Nango, E.Suzuki, M.Tanaka, T.Masuda, T.Tanaka, R.Shimamura, T.Tanaka, Y.Suno, C.Ihara, K.Pan, D.Kakinouchi, K.Sugiyama, S.Murata, M.Inoue, T.Tono, K.Song, C.Park, J.Kameshima, T.Hatsui, T.Joti, Y.Yabashi, M.Iwata, S.

(2015) Nat Methods 12: 61-63

  • DOI: https://doi.org/10.1038/nmeth.3172
  • Primary Citation of Related Structures:  
    3WUL, 3WUM, 3WXQ, 3WXS, 3WXT, 3WXU, 4W4Q

  • PubMed Abstract: 

    Serial femtosecond X-ray crystallography (SFX) has revolutionized atomic-resolution structural investigation by expanding applicability to micrometer-sized protein crystals, even at room temperature, and by enabling dynamics studies. However, reliable crystal-carrying media for SFX are lacking. Here we introduce a grease-matrix carrier for protein microcrystals and obtain the structures of lysozyme, glucose isomerase, thaumatin and fatty acid-binding protein type 3 under ambient conditions at a resolution of or finer than 2 Å.


  • Organizational Affiliation

    RIKEN SPring-8 Center, Sayo, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Lysozyme C129Gallus gallusMutation(s): 0 
EC: 3.2.1.17
UniProt
Find proteins for P00698 (Gallus gallus)
Explore P00698 
Go to UniProtKB:  P00698
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP00698
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.199 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79α = 90
b = 79β = 90
c = 38γ = 90
Software Package:
Software NamePurpose
CrystFELdata collection
REFMACrefinement
CrystFELdata reduction
XDSdata scaling
REFMACphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-11-05
    Type: Initial release
  • Version 1.1: 2015-02-04
    Changes: Database references
  • Version 1.2: 2018-01-24
    Changes: Data collection, Refinement description