Macromolecules
Sequence Display for 3VQT

Classification: TRANSLATION

Total Structure Weight: 247256.11

Macromolecule Entities
Molecule Chains Length Organism Details
Peptide chain release factor 3 A, B, C, D 548 Desulfovibrio vulgaris Gene Name(s): prfC DvMF_2372
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A, B, C, D GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.177
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 47.39 α = 104.21
b = 82.79 β = 89.78
c = 148.29 γ = 89.63

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-30
  • Released Date: 2012-09-05
  • Deposition author(s): Kihira, K., Shomura, Y., Shibata, N., Kitamura, M., Higuchi, Y.

Revision History

  • Version 1_0: 2012-09-05

    Type: Initial release

  • Version 1_1: 2013-07-31

    Type: Database references

  • Version 1_2: 2017-11-22

    Type: Refinement description