Improved crystal structure of Pseudomonas aeruginosa OprD
3SY7
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Membrane Protein
    Structure Weight: 49402.24
    Molecule: Porin D
    Polymer: 1 Type: protein Length: 428
    Chains: A
    EC#: 3.4.21   
    Fragment: unp residues 24-443
    Mutation: V140F
    Organism: Pseudomonas aeruginosa
    Gene Names: oprD PA0958
    UniProtKB: Protein Feature View | Search PDB | P32722  
    Membrane Protein:   Source: mpstruc
    BETA-BARREL
    Outer Membrane Carboxylate Channels (Occ)
    OccD1 (OprD) basic amino acid uptake channel
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Pseudomonas aeruginosa   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    2ODJ    
    3SY9    
    3SYB    
    3SYS    
    3SZD    
    3SZV    
    3T0S    
    3T20    
    3T24    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    C8E
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    C8E C16 H34 O5
    (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   van den Berg, B.,  Eren, E.

    Deposition:   2011-07-15
    Release:   2012-02-08
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.15
    R-Value: 0.197 (obs.)
    R-Free: 0.226
    Space Group: C 1 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 136.41 α = 90.00 
    b = 103.89 β = 107.68 
    c = 47.54 γ = 90.00