3S9L

Complex between transferrin receptor 1 and transferrin with iron in the N-Lobe, cryocooled 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.22 Å
  • R-Value Free: 0.314
  • R-Value Work: 0.271

Literature

Macromolecules
Sequence Display for 3S9L

Classification: TRANSPORT PROTEIN

Total Structure Weight: 301781.31

Macromolecule Entities
Molecule Chains Length Organism Details
Transferrin receptor protein 1 A, B 654 Homo sapiens Fragment: UNP residues 120-760
Mutation: G142S
Gene Name(s): TFRC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Serotransferrin C, D 693 Homo sapiens Fragment: UNP residues 20-698
Mutation: N413D, Y426F, I429V, Y517F, N611D
Gene Name(s): TF Gene View PRO1400
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CO3
Query on CO3

C, D CARBONATE ION
C O3
BVKZGUZCCUSVTD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

C, D FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.22 Å
  • R-Value Free: 0.314
  • R-Value Work: 0.271
  • Space Group: P 43 2 2

Unit Cell:

Length (Å) Angle (°)
a = 231.68 α = 90.00
b = 231.68 β = 90.00
c = 168.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-06-01
  • Released Date: 2011-08-10
  • Deposition author(s): Eckenroth, B.E., Steere, A.N., Mason, A.B., Everse, S.J.

Revision History

  • Version 1_0: 2011-08-10

    Type: Initial release

  • Version 1_1: 2011-12-07

    Type: Derived calculations, Other

  • Version 1_2: 2011-12-14

    Type: Database references