3S93

Crystal structure of conserved motif in TDRD5

• PDB DOI: https://doi.org/10.2210/pdb3S93/pdb

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2011-05-31 Released: 2011-08-31 
• Deposition Author(s): Chao, X., Tempel, W., Bian, C., Kania, J., Wernimont, A.K., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.28 Å
• R-Value Free: 0.271 
• R-Value Work: 0.245 
• R-Value Observed: 0.246 

Literature

Crystal structure of conserved motif in TDRD5

Chao, X., Tempel, W., Bian, C., Kania, J., Wernimont, A.K., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Min, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 22.72 kDa 
• Atom Count: 1,238 
• Modelled Residue Count: 161 
• Deposited Residue Count: 204 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tudor domain-containing protein 5	A, B	102	Homo sapiens	Mutation(s): 0  Gene Names: TDRD5
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NAT2 (Homo sapiens) Explore Q8NAT2  Go to UniProtKB:  Q8NAT2
PHAROS:  Q8NAT2 GTEx:  ENSG00000162782

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
UNX	C [auth A], D [auth A], E [auth A], F [auth B], G [auth B], H [auth B], I [auth B], J [auth B]	UNKNOWN ATOM OR ION X

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.28 Å
• R-Value Free: 0.271 
• R-Value Work: 0.245 
• R-Value Observed: 0.246 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.94	α = 90
b = 43.33	β = 90
c = 126.6	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
SOLVE	phasing
RESOLVE	phasing
BUSTER-TNT	refinement
PDB_EXTRACT	data extraction
BUSTER	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-08-31 
Deposition Author(s): Chao, X., Tempel, W., Bian, C., Kania, J., Wernimont, A.K., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2011-08-31
  Type: Initial release
  
• Version 1.1: 2024-02-28
  Changes: Data collection, Database references