3RVY

Crystal structure of the NavAb voltage-gated sodium channel (Ile217Cys, 2.7 A)

Structural Biology Knowledgebase: 3RVY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.266

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3RVY

Classification: METAL TRANSPORT

Total Structure Weight: 73000.08

Macromolecule Entities
Molecule Chains Length Organism Details
Ion transport protein A, B 285 Arcobacter butzleri Mutation: I1217C
Gene Name(s): Abu_1752

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Channels: Potassium, Sodium, & Proton Ion-Selective

Protein Name: Voltage-Gated Sodium Channel (NaV), I217C mutant


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PX4
Query on PX4

A, B 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
C36 H73 N O8 P
CITHEXJVPOWHKC-UUWRZZSWSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.266
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 125.59 α = 90.00
b = 125.48 β = 90.00
c = 192.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-06
  • Released Date: 2011-07-13
  • Deposition author(s): Payandeh, J., Scheuer, T., Zheng, N., Catterall, W.A.

Revision History

  • 2011-07-27
    Type: Citation | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4