3PTF

X-ray structure of the non-covalent complex between UbcH5A and Ubiquitin

Structural Biology Knowledgebase: 3PTF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.209

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3PTF

Classification: LIGASE

Total Structure Weight: 52274.18

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin-conjugating enzyme E2 D1 A, B 153 Homo sapiens EC#: 2.3.2.23 IUBMB
Fragment: E2
Gene Name(s): UBE2D1 Gene View SFT UBC5A UBCH5 UBCH5A
Polyubiquitin-B C, D 79 Homo sapiens Fragment: Ubiquitin
Gene Name(s): UBC Gene View


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.209
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 27.46 α = 90.00
b = 102.90 β = 90.00
c = 159.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-12-02
  • Released Date: 2011-05-11
  • Deposition author(s): Bosanac, I., Hymowitz, S.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4