3PES

Crystal structure of uncharacterized protein from Pseudomonas phage YuA

• PDB DOI: https://doi.org/10.2210/pdb3PES/pdb

• Classification: Structural genomics, Unknown function
• Organism(s): Pseudomonas virus Yua
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2010-10-27 Released: 2010-12-08 
• Deposition Author(s): Nocek, B., Stein, A., Evdokimove, A., Egorova, O., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.30 Å
• R-Value Free: 0.205 
• R-Value Work: 0.176 
• R-Value Observed: 0.177 

Literature

Crystal structure of uncharacterized protein from Pseudomonas phage YuA

Nocek, B., Stein, A., Evdokimove, A., Egorova, O., Savchenko, A., Edwards, A., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 19.76 kDa 
• Atom Count: 1,648 
• Modelled Residue Count: 165 
• Deposited Residue Count: 170 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein gp49	A, B	85	Pseudomonas virus Yua	Mutation(s): 0  Gene Names: gp49
UniProt
Find proteins for A9J573 (Pseudomonas phage YuA) Explore A9J573  Go to UniProtKB:  A9J573

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.30 Å
• R-Value Free: 0.205 
• R-Value Work: 0.176 
• R-Value Observed: 0.177 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 38.059	α = 90
b = 59.745	β = 103.98
c = 38.154	γ = 90

Software Package:

Software Name	Purpose
SBC-Collect	data collection
HKL-3000	phasing
SHELX	model building
ARP/wARP	model building
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
SHELX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-12-08 
Deposition Author(s): Nocek, B., Stein, A., Evdokimove, A., Egorova, O., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2010-12-08
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance