Download MendeleyRadiation damage study of thermolysin - 160K structure C (4.8 MGy)
Juers, D.H., Weik, M.To be published.
3P7V
Radiation damage study of thermolysin - 160K structure C (4.8 MGy)
- PDB DOI: https://doi.org/10.2210/pdb3P7V/pdb
- Classification: HYDROLASE
- Organism(s): Bacillus thermoproteolyticus
- Mutation(s): Yes
- Deposited: 2010-10-12 Released: 2010-12-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.202
- R-Value Work: 0.146
- R-Value Observed: 0.149
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thermolysin | A [auth E] | 316 | Bacillus thermoproteolyticus | Mutation(s): 2 EC: 3.4.24.27 |  |
UniProt | |||||
Find proteins for P00800 (Bacillus thermoproteolyticus) Explore P00800 Go to UniProtKB: P00800 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00800 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | F [auth E] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CA Query on CA | B [auth E], C [auth E], D [auth E], E | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.202
- R-Value Work: 0.146
- R-Value Observed: 0.149
- Space Group: P 61 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 93.85 | α = 90 |
| b = 93.85 | β = 90 |
| c = 128.74 | γ = 120 |
| Software Name | Purpose |
|---|---|
| MOSFLM | data reduction |
| SCALA | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2010-12-08 Deposition Author(s): Juers, D.H., Weik, M.
Revision History (Full details and data files)
- Version 1.0: 2010-12-08
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2015-03-25
Changes: Other - Version 1.3: 2024-02-21
Changes: Data collection, Database references, Derived calculations
