Download MendeleyCrystal structure of isocitrate lyase from Brucella melitensis, bound to magnesium isocitrate
SSGCID, Gardberg, A., Edwards, T., Gander, M., Staker, B., Stewart, L.To be published.
3P0X
Crystal structure of isocitrate lyase from Brucella melitensis, bound to magnesium isocitrate
- PDB DOI: https://doi.org/10.2210/pdb3P0X/pdb
- Classification: LYASE
- Organism(s): Brucella abortus 2308
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-09-29 Released: 2010-10-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.230
- R-Value Work: 0.178
- R-Value Observed: 0.180
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Isocitrate lyase | 433 | Brucella abortus 2308 | Mutation(s): 0 Gene Names: aceA, BAB1_1631, BruAb1_1601 EC: 4.1.3.1 |  | |
UniProt | |||||
Find proteins for Q2YQA0 (Brucella abortus (strain 2308)) Explore Q2YQA0 Go to UniProtKB: Q2YQA0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2YQA0 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ICT Query on ICT | G [auth A], J [auth B], N [auth C], Q [auth D] | ISOCITRIC ACID C6 H8 O7 ODBLHEXUDAPZAU-ZAFYKAAXSA-N |  | ||
| EDO Query on EDO | E [auth A] F [auth A] I [auth B] L [auth C] M [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| MG Query on MG | H [auth A], K [auth B], O [auth C], R [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.230
- R-Value Work: 0.178
- R-Value Observed: 0.180
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M33P0X
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 76.91 | α = 90 |
| b = 135.93 | β = 90 |
| c = 181.79 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| StructureStudio | data collection |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2010-10-27 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2010-10-27
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2011-11-09
Changes: Non-polymer description - Version 1.3: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
