Download MendeleyT.Gondii bradyzoite-specific LDH (LDH1) in complex with NAD and OXQ
Susko, M.S., Wilson, D.K.To be published.
3OM9
T. Gondii bradyzoite-specific LDH (LDH1) in complex with NAD and OXQ
- PDB DOI: https://doi.org/10.2210/pdb3OM9/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Toxoplasma gondii
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2010-08-26 Released: 2010-10-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.98 Å
- R-Value Free: 0.223
- R-Value Observed: 0.196
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lactate dehydrogenase | 329 | Toxoplasma gondii | Mutation(s): 0 Gene Names: Lactate Dehydrogenase, TGGT1_115280 EC: 1.1.1.27 |  | |
UniProt | |||||
Find proteins for P90613 (Toxoplasma gondii) Explore P90613 Go to UniProtKB: P90613 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P90613 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD Query on NAD | E [auth A], G [auth B], I [auth C], K [auth D] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | ||
| OXQ Query on OXQ | F [auth A], H [auth B], J [auth C], L [auth D] | 4-HYDROXY-1,2,5-OXADIAZOLE-3-CARBOXYLIC ACID C3 H2 N2 O4 IBRWUZLLHSXPKL-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.98 Å
- R-Value Free: 0.223
- R-Value Observed: 0.196
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 67.307 | α = 90 |
| b = 124.458 | β = 105.61 |
| c = 86.721 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| X-PLOR | model building |
| CNS | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| X-PLOR | phasing |
Entry History
Deposition Data
- Released Date: 2010-10-27 Deposition Author(s): Susko, M.S., Wilson, D.K.
Revision History (Full details and data files)
- Version 1.0: 2010-10-27
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2024-02-21
Changes: Data collection, Database references, Derived calculations
