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Human PARP-1 zinc finger 1 (Zn1) bound to DNA
DOI:10.2210/pdb3od8/pdb   NDB ID: NA0655
3OD8
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA Binding Protein/dna
    Structure Weight: 131582.40
    Molecule: Poly [ADP-ribose] polymerase 1
    Polymer: 1 Type: protein Length: 116
    Chains: A, B, C, D, E, F, G, H
    EC#: 2.4.2.30   
    Fragment: PARP-1 zinc finger 1, Zn1, UNP residues 2-96
    Organism: Homo sapiens
    Gene Names: Gene View for PARP1 ADPRT PPOL
    UniProtKB: Protein Feature View | Search PDB | P09874  
    Molecule: 5'-D(*GP*CP*CP*GP*CP*TP*TP*GP*GP*G)-3'
    Polymer: 2 Type: dna Length: 10
    Chains: I, K, M, O
    Molecule: 5'-D(*CP*CP*CP*AP*AP*GP*CP*GP*GP*C)-3'
    Polymer: 3 Type: dna Length: 10
    Chains: J, L, N, P
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3ODA  Human PARP-1 zinc finger 2 (Zn2) bound to DNA 
    3ODC  Human PARP-1 zinc finger 1 (Zn1) bound to DNA 
    3ODE  Human PARP-1 zinc finger 2 (Zn2) bound to DNA 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ZN
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    ZN Zn
    ZINC ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    MSE
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    MSE C5 H11 N O2 Se MET lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA0655
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Pascal, J.M.,  Langelier, M.-F.

    Deposition:   2010-08-11
    Release:   2011-01-12
    Last Modified (REVDAT):   2011-06-08
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.40
    R-Value: 0.194 (obs.)
    R-Free: 0.241
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 63.22 α = 90.00 
    b = 107.70 β = 100.20 
    c = 86.14 γ = 90.00