3NVW

Crystal Structure of Bovine Xanthine Oxidase in Complex with Guanine

Structural Biology Knowledgebase: 3NVW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.184

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3NVW

Classification: OXIDOREDUCTASE

Total Structure Weight: 280751.00

Macromolecule Entities
Molecule Chains Length Organism Details
Xanthine dehydrogenase/oxidase A, J 164 Bos taurus EC#: 1.17.1.4 IUBMB 1.17.3.2 IUBMB
Fragment: Iron-Sulfur Binding Domain
Gene Name(s): XDH Gene View
Xanthine dehydrogenase/oxidase B, K 334 Bos taurus EC#: 1.17.1.4 IUBMB 1.17.3.2 IUBMB
Fragment: Flavin Binding Domain
Gene Name(s): XDH Gene View
Xanthine dehydrogenase/oxidase C, L 756 Bos taurus EC#: 1.17.1.4 IUBMB 1.17.3.2 IUBMB
Fragment: Molybdenum Binding Domain
Gene Name(s): XDH Gene View

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

B, K FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MTE
Query on MTE

C, L PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO- 4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA- 1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
C10 H14 N5 O6 P S2
HPEUEJRPDGMIMY-IFQPEPLCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FES
Query on FES

A, J FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MOS
Query on MOS

C, L DIOXOTHIOMOLYBDENUM(VI) ION
H Mo O2 S
BDSRWPHSAKXXRG-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GUN
Query on GUN

C, L GUANINE
C5 H5 N5 O
UYTPUPDQBNUYGX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.184
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 132.68 α = 90.00
b = 73.40 β = 96.97
c = 138.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-08
  • Released Date: 2011-01-19
  • Deposition author(s): Cao, H., Hille, R.

Revision History

  • 2014-09-03
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4