3M9E

Thyroid hormone beta DNA binding domain homodimer with inverted palindrome TRE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.41 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 3M9E

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 76862.34


Macromolecule Entities
Molecule Chains Length Organism Details
Thyroid hormone receptor beta A, B, E, F 105 Rattus norvegicus Fragment: DNA binding domain (UNP residues 104 to 206)
Gene Name(s): Thrb Erba2 Nr1a2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*AP*TP*TP*GP*AP*CP*CP*TP*CP*AP*GP*CP*TP*GP*AP*GP*GP*TP*CP*AP*AP*T)-3') C, D, G, H 22 synthetic Inverted palindrome thyroid response element

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, E, F ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.41 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.179
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 73.74 α = 90.00
b = 83.47 β = 98.28
c = 75.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-03-22
  • Released Date: 2010-08-18
  • Deposition author(s): Chen, Y.

Revision History

  • Version 1_0: 2010-08-18

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance