3M1F

Crosslinked complex of actin with first W domain of Vibrio parahaemolyticus VopL

Structural Biology Knowledgebase: 3M1F SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.89 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.212

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3M1F

Classification: CONTRACTILE PROTEIN

Total Structure Weight: 45850.16

Macromolecule Entities
Molecule Chains Length Organism Details
Actin, alpha skeletal muscle A 375 Oryctolagus cuniculus Gene Name(s): ACTA1 Gene View ACTA
Putative uncharacterized protein VPA1370 V 31 Vibrio parahaemolyticus Fragment: VopL WH2 domain (130-160aa)
Mutation: V131C
Gene Name(s): VPA1370

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
HIC
Query on HIC
A L-PEPTIDE LINKING C7 H11 N3 O2 HIS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.89 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.212
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.61 α = 90.00
b = 76.36 β = 90.00
c = 86.14 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-03-04
  • Released Date: 2010-09-15
  • Deposition author(s): Namgoong, S., Dominguez, R.

Revision History

  • 2014-04-02
    Type: Other | Details: source organism
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4